Yes, this kit was made for the Academy 1/48 kit as there were no other 1/48 MiG-29UB to my knowledge. Both the cockpit set and the academy kit are out of production now I think.
Here is how much I had to cut off the seat so far (approximately 2.2mm):
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It is much better now, but it looks like it may still need a little more taken out (I cannot tell for sure since I also have to modify the canopy a bit. The piece behind the seat is wider than the original piece so I have to modify the canopy a bit as well). Surprisingly it doesn't look like it has been cut once it sits in the tub. I'll post updates later once I'm done with this. Thanks!