If you're asking about methods to preserve the details before applying putty, I would use masking tape to protect the seam's surroundings. Other way would be using q-tips and thinner to remove excess freshly applied putty without the need for sanding.
On this case however (what a coincidence. it's kinda my will-be case too, as I'm currently building Eduard's P-39Q), I would combine careful sanding and re-scribing detail beforehand so you don't have to do it from scratch if so much sanding is needed that they would disappear.
From the pics it seems that most of the details endangered are mostly straight panel lines and some rivet detail, so this shouldn't be too hard.
I would first scribe out the obscured details, then begin careful sanding (with rolled-up sand paper, suitable files, etc), constantly checking your progress so that you don't lose the scribed detail on the puttied areas, re-scribing details and applying more putty when needed. Continue until the seams are fixed, then finish by scribing the details to the same depth as the rest.